Tikwiki has to work with a program like Sesame (http://www.openrdf.org) and/or Jena (http://jena.sourceforge.net/) to function properly with a created ontology.
In a more practic view, the data that people insert/edit shouldn't be stored in a straightforward manner (e.g. plain text in a MySQL database) but rather in RDF in the Jena/Sesame repository or database.
ML: check out Semantic wiki links in 3.0!
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